Bioinformatics Study: Molecular Docking of Cat Whiskers Flavonoid Compounds for the Development of Antidiabetic Candidates

https://doi.org/10.61487/jiste.v2i4.112

Authors

  • Saeful Amin Universitas Bakti Tunas Husada
  • Febia Citraeni Rusdaita Universitas Garut
  • Riska Prasetiawati Universitas Garut

Keywords:

antidiabetic, flavonoids, molecular docking

Abstract

Diabetes mellitus is a chronic disease characterized by hyperglycemia. In silico studies have been done on flavonoid derivative compounds from the cat's whiskers plant (Orthosiphon stamineus Benth.) on protein tyrosine phosphatase 1B (2F70) and aldose reductase enzymes (4YVP and 4YVX) to see if they can be used as diabetes medicines. The molecular docking of the test compounds found three that were more active than the comparison ligands. One of these was the luteolin compound, which can stop the Protein Tyrosine Phosphatase 1B receptor from working with an ∆G value of -8.05 kcal/mol and a Ki value of 1.25 µM by forming amino acid residues. SER A: 216, ARG A: 221, ALA A: 217, VAL A: 490, TYR A: 46, and ASP A: 181 show that the sinensetin compound can stop the aldose reductase enzyme from working, working with a ∆G value of -7.72 kcal/mol and a Ki value of 2.19 µM to form amino acid residues. ALA B: 25, GLU B: 224, LEU B: 54, HIS B: 222, TRP B: 227, and the 6-hydroxy-5,7,4'-trimethoxyflavone compound can stop the aldose reductase enzyme from working (∆G value of -7.02 kcal/mol, Ki 7.14 µM), which creates amino acid residues. HIS B:117, TYR B:55, SER B:217, PHE B:306. Based on the analysis of these compounds, they exhibit good physicochemical and pharmacokinetic profiles. Additionally, the toxicity analysis confirms that none of these compounds are mutagenic, carcinogenic, or harmful to humans.

References

Alfred Goodman Gilman, M. P. (2012). Dasar Farmakologi Terapi Edisi 10. Jakarta: Penerbit EGC, 4.

Amalina Ahmad Azam, R. P. (2017). Urinary metabolomics study on the protective role of Orthosiphon stamineus in Streptozotocin induced diabetes mellitus in rats via 1H NMR spectroscopy. BMC Complementary and Alternative Medicine, 278.

Aria Wahyuni, N. (2016). Senam Kaki Diabetik Efektif Meningkatkan Ankle Brachial Index Pasien Diabetes Melitus Tipe 2. Jurnal Ipteks Terapan Research of Applied Science and Education, 155-164.

Avtar Chand Rana, B. (2019). Chemistry and Pharmacology of Flavonoids- A Review. Indian Journal of Pharmaceutical Education and Research, 53(1).

Doni Dermawan, R. S. (2019). Molecular Dyamic Simulation of Estrogen Receptor Alpha Aganist Andrografolid as Anti Breast Cancer. Indonesian Journal of Pharmaceutical Science and Technology.

Fauzan Zein Muttaqin, H. I. (2019). Studi Molecular Docking, Molecular Dynamic, Dan Prediksi Toksisitas Senyawa Turunan Alkaloid Naftiridin Sebagai Inhibitor Protein Kasein Kinase 2-Α Pada Kanker Leukemia. Pharmaoscript, 46-64.

I Ketut Adyana, F. S. (2013). From Ethnopharmacology to Clinical Study of Orthosiphon Stamineus Benth. International Journal of Pharmacy and Pharmaceutical Sciences, 5(3), 66-73.

Indonesia, K. R. (2018). Riset Kesehatan Dasar.

Juni Ekowati, N. W. (2018). Molecular Docking of Ferulic Acid Derivatives on P2Y12. J. Math. Fund. Sci, 203-2019.

Karisma Enggar Saputri, N. F. (2016). Docking Molekular Potensi Anti Diabetes Melitus Tipe 2 Turunan Zerumbon Sebagai Inhibitor Aldosa Reduktase Dengan AutoDock-Vina. Fakultas Farmasi, Universitas Muhammadiyah Surakarta, 16-20.

M. Amzad Hossain, S. (2011). Isolation And Characterisation of Flavonoids from The Leaves of Medicinal Plant Orthosiphon Stamineus. Arabian Journal of Chemistry.

Phi Hung Nguyen, H. N. (2019). Glucose Uptake Stimulatory and PTP1B Inhibitory Activities of Pimarane Diterpenes from Orthosiphon stamineus Benth. Biomolecules.

Priyanka Tolambiya, S. (2017). Identifiation of cost-effective drug through in-silico approach of Catharanthus roseus plant ligand-receptor docking for Type 2 Diabetes NIDDM. Chemistry & Biology Interface, 64-78.

Radden Jody Sutama Putra, A. H. (2017). Kejadian Efek Samping Potensial Terapi Obat Antidiabetes Pasien Diabetes Melitus Berdasarkan Algoritma Naranjo. 2(2), 45-50.

Riska Prasetiawati, B. P. (2018). MOLECULAR DOCKING STUDY OF XANTHONE DERIVATIVE COMPOUNDS OF MANGOSTEEN RIND (Garcinia mangostana L.) TO ER-α (ESTROGEN RECEPTOR ALFA) AND ER-β (ESTROGEN RECEPTOR BETA) AS ANTI-BREASTCANCER. Jurnal Ilmiah Farmako Bahari.

Susanti, N. M. P., D. P., & I. P. D. N. Parahyangan, I. (2018). Molecular Docking Sianidin dan Peonidin Sebagai Antiinflamasi pada Aterosklerosis Secara in Silico. Jurnal Farmasi Udayana, 7(1), 28-33.

V. Sreenivasa Murthy, V. (2002). Molecular Modeling of Protein Tyrosine Phosphatase 1B (PTP 1B) Inhibitors. (10).

Wai Ho Tang, K. J. (2012). Aldose Reductase, Oxidative Stress,and Diabetic Mellitus . 3(87).

Published

2024-12-12

How to Cite

Amin, S., Rusdaita, F. C., & Prasetiawati, R. (2024). Bioinformatics Study: Molecular Docking of Cat Whiskers Flavonoid Compounds for the Development of Antidiabetic Candidates. Journal of Information System, Technology and Engineering, 2(4), 331–341. https://doi.org/10.61487/jiste.v2i4.112

Issue

Section

Articles